Basic Information
Locus ID:
BniB06g008330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 4228521 | 4231878 | + | BniB06g008330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 64,249.89 Da | 35.93 | 99.13 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 70 | 5.0E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 123 | 180 | 1.7E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 304 | 567 | 3.3E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 294 | 578 | 2.6E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 195 | 1.09E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 216 | 1.3E-54 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 378 | 576 | 3.5E-62 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 277 | 377 | 8.7E-19 | - |
| SMART | SM00220 | serkin_6 | 302 | 574 | 1.1E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 302 | 574 | 39.255077 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 308 | 334 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 421 | 433 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35620.1 | Leucine-rich repeat protein kinase family protein. Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots. | 0 |
| RefSeq | XP_018433271.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Raphanus sativus] | 0 |
| C0LGL9 | LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana OX=3702 GN=FEI2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B6V1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009407 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36909 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15117 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004691 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24316, Sbi_jg8148 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11875 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010863 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52505, Sgl57765 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006654, gene:ENSEOMG00000023553 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0000860, CQ.Regalona.r1.5BG0001030 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30020970 |
| Apiaceae | Apium graveolens | 1 | Ag1G00005 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009650 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716644, gene-LOC108510915 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1064.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G19631, Ftri14G02853, Ftri7G02746 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G31420.1, AT2G35620.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007149m.g.v1.0, Thhalv10016417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27220.v2.2, Sp4g17860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g008960.2N, BniB06g008330.2N, BniB08g022330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0895 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1020, Cgl06G0436 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.973 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003704, Pov_00028638 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12032, Lb7G35211 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.4233, BH01.4537, CH01.4840, Contig2765.1 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0242320, gene-QOZ80_3BG0285830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0389380.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069085 |
| Poaceae | Oryza coarctata | 2 | Oco05G009140, Oco06G009490 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g16010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G405900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102215, Pt_Chr0102238 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G007430, Chr07G004220, Chr12G008950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G372600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG012570, gene_TRIDC4BG037730 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G092500.1, TraesCS4B02G211800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb011920_P001, Zm00001eb397950_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2136, nbis-gene-3796 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1563, Zma_g3956 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2920, evm.TU.LG10.550, evm.TU.LG16.694 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g02140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.665 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24822 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18524 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19071 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.175, evm.TU.utg000022l.176 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016171 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-184 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10438 |
| Salicaceae | Populus euphratica | 3 | populus_peu03314, populus_peu34161, populus_peu37974 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609594, gene-LOC132635514 |
| Solanaceae | Solanum chilense | 1 | SOLCI002772200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028457 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16130 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0556 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02270.v3.1 |