halophFGD

Basic Information

Locus ID: BniB06g005400.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Dimerisation domain of Zinc Transporter

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B6	2649781	2651913	+	BniB06g005400.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.00	44,134.25 Da	41.91	101.71	0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01545	Cation efflux family	105	298	1.8E-28	IPR002524
Pfam	PF16916	Dimerisation domain of Zinc Transporter	313	378	1.8E-10	IPR027470
SUPERFAMILY	SSF161111	Cation efflux protein transmembrane domain-like	99	299	1.06E-38	IPR027469
SUPERFAMILY	SSF160240	Cation efflux protein cytoplasmic domain-like	303	379	1.44E-14	IPR036837
Gene3D	G3DSA:3.30.70.1350	Cation efflux protein, cytoplasmic domain	300	380	3.0E-16	IPR036837
Gene3D	G3DSA:1.20.1510.10	Cation efflux protein transmembrane domain	103	297	4.0E-40	IPR027469
TIGRFAM	TIGR01297	CDF: cation diffusion facilitator family transporter	104	379	5.3E-30	IPR002524

Gene Ontology

Biological Process:

GO:0006812 (monoatomic cation transport) GO:0055085 (transmembrane transport)

Molecular Function:

GO:0008324 (monoatomic cation transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G39450.1	Cation efflux family protein. Encodes a Golgi-localized manganese transporter that is involved in Mn tolerance. When expressed into yeast cells, this gene confer Mn<sup>2+</sup> and Cu<sup>2+</sup> tolerance.
RefSeq	XP_033146821.1	metal tolerance protein 11 [Brassica rapa]
Swiss-Prot	O80632	Metal tolerance protein 11 OS=Arabidopsis thaliana OX=3702 GN=MTP11 PE=2 SV=1
TrEMBL	A0A8X7WC38	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009118 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg20556, jg21712, jg38137, jg38515, jg4433
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12058, gene_12767, gene_12936, gene_19116
Amaranthaceae	Atriplex hortensis	4	Ah004891, Ah021438, Ah033407, Ah035921
Amaranthaceae	Beta vulgaris	2	BVRB_2g037080, BVRB_4g071530
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg18030, Sbi_jg20875, Sbi_jg22901, Sbi_jg39872 ... Sbi_jg59169, Sbi_jg62660, Sbi_jg63469
Amaranthaceae	Salicornia europaea	4	Seu_jg1259, Seu_jg14456, Seu_jg16762, Seu_jg23432
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00009370, GOSA_00012766, GOSA_00014217, GOSA_00014370
Amaranthaceae	Suaeda glauca	9	Sgl02574, Sgl07729, Sgl12339, Sgl17622, Sgl24329, Sgl29501 ... Sgl62176, Sgl62206, Sgl66737
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000010026, gene:ENSEOMG00000016230 ... gene:ENSEOMG00000016557, gene:ENSEOMG00000017659, gene:ENSEOMG00000017928, gene:ENSEOMG00000018709, gene:ENSEOMG00000027028, gene:ENSEOMG00000030476, gene:ENSEOMG00000033168, gene:ENSEOMG00000043542, gene:ENSEOMG00000044322, gene:ENSEOMG00000046777, gene:ENSEOMG00000050982
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0022910, CQ.Regalona.r1.1BG0001340 ... CQ.Regalona.r1.2AG0010890, CQ.Regalona.r1.2BG0012270, CQ.Regalona.r1.3AG0019320, CQ.Regalona.r1.3BG0020020, CQ.Regalona.r1.4AG0000570, CQ.Regalona.r1.4BG0000660
Anacardiaceae	Pistacia vera	5	pistato.v30054330, pistato.v30172100, pistato.v30188150 ... pistato.v30188160, pistato.v30278440
Apiaceae	Apium graveolens	5	Ag10G01093, Ag10G02958, Ag3G02327, Ag4G02002, Ag5G02659
Arecaceae	Cocos nucifera	7	COCNU_03G003500, COCNU_03G009060, COCNU_04G002340 ... COCNU_04G014930, COCNU_09G000620, COCNU_12G007480, scaffold003874G000050
Arecaceae	Phoenix dactylifera	6	gene-LOC103705933, gene-LOC103708630, gene-LOC103710582 ... gene-LOC103712907, gene-LOC103712998, gene-LOC103719574
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.2999.V1.1, AsparagusV1_02.190.V1.1 ... AsparagusV1_03.1273.V1.1, AsparagusV1_05.602.V1.1, AsparagusV1_06.476.V1.1, AsparagusV1_08.3462.V1.1
Asteraceae	Flaveria trinervia	6	Ftri14G28191, Ftri15G13790, Ftri16G19849, Ftri17G27077 ... Ftri2G12028, Ftri7G15206
Brassicaceae	Arabidopsis thaliana	4	AT1G16310.1, AT1G79520.2, AT2G39450.1, AT3G58060.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10006008m.g.v1.0, Thhalv10009396m.g.v1.0 ... Thhalv10016762m.g.v1.0, Thhalv10018658m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g14500.v2.2, Sp4g08160.v2.2, Sp5g04660.v2.2 ... Sp5g34570.v2.2
Brassicaceae	Brassica nigra	9	BniB01g005740.2N, BniB03g026870.2N, BniB06g005400.2N ... BniB06g041640.2N, BniB06g055260.2N, BniB06g063610.2N, BniB06g067870.2N, BniB06g067880.2N, BniB08g072770.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G1719, Ceq01G1720, Ceq01G1721, Ceq01G1722, Ceq02G0712 ... Ceq05G2182, Ceq05G2183, Ceq05G2184
Casuarinaceae	Casuarina glauca	7	Cgl01G1875, Cgl01G1876, Cgl01G1877, Cgl01G1878, Cgl02G0721 ... Cgl05G2278, Cgl05G2279
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno03g10720, gene.Cymno04g15600, gene.Cymno05g16210 ... gene.Cymno09g01060, gene.Cymno09g09450
Dunaliellaceae	Dunaliella salina	1	Dusal.0199s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g33560, gene.Thate03g01460, gene.Thate05g05000 ... gene.Thate05g25550
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2959, evm.TU.LG02.1548, evm.TU.LG09.456
Plantaginaceae	Plantago ovata	4	Pov_00006180, Pov_00006835, Pov_00011551, Pov_00038139
Plumbaginaceae	Limonium bicolor	9	Lb1G04699, Lb1G05350, Lb1G05354, Lb2G12400, Lb2G12417 ... Lb3G18986, Lb3G20333, Lb4G24776, Lb7G33199
Poaceae	Echinochloa crus-galli	12	AH01.4424, AH02.3808, AH02.804, AH07.3657, BH02.3817 ... BH02.807, BH07.3466, BH07.4128, CH01.5029, CH02.913, CH07.3541, Contig192.60
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0008290, gene-QOZ80_1AG0039190 ... gene-QOZ80_1BG0057070, gene-QOZ80_1BG0089210, gene-QOZ80_2AG0147720, gene-QOZ80_2BG0203150, gene-QOZ80_3AG0239950, gene-QOZ80_3BG0288040, gene-QOZ80_5AG0370420, gene-QOZ80_5BG0417950
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0073140.1, HORVU.MOREX.r3.3HG0222000.2 ... HORVU.MOREX.r3.3HG0303160.1, HORVU.MOREX.r3.4HG0393950.1, HORVU.MOREX.r3.6HG0617950.1
Poaceae	Lolium multiflorum	5	gene-QYE76_014315, gene-QYE76_025868, gene-QYE76_048862 ... gene-QYE76_049054, gene-QYE76_055497
Poaceae	Oryza coarctata	9	Oco01G001180, Oco01G024410, Oco02G001200, Oco02G025270 ... Oco04G023700, Oco05G007000, Oco06G007250, Oco09G011580, Oco10G011550
Poaceae	Oryza sativa	5	LOC_Os01g03914.1, LOC_Os01g62070.1, LOC_Os02g53490.1 ... LOC_Os03g12530.1, LOC_Os05g38670.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G427600, gene-BS78_03G078200, gene-BS78_K132400 ... gene-BS78_03G078600, gene-BS78_03G329500, gene-BS78_04G293600
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0101911, Pt_Chr0101938, Pt_Chr0207027, Pt_Chr0207033 ... Pt_Chr0304947, Pt_Chr0304969, Pt_Chr0504712, Pt_Chr0504728, Pt_Chr0602061, Pt_Chr0602072
Poaceae	Sporobolus alterniflorus	19	Chr01G019050, Chr01G028680, Chr02G005230, Chr02G024320 ... Chr03G003520, Chr03G019660, Chr05G002250, Chr05G028150, Chr06G000930, Chr07G000760, Chr08G001480, Chr08G022440, Chr09G018420, Chr12G010780, Chr13G002830, Chr15G002270, Chr15G019190, Chr22G006350, Chr30G009900
Poaceae	Thinopyrum elongatum	6	Tel1E01G465600, Tel3E01G074100, Tel3E01G570200 ... Tel4E01G402500, Tel6E01G570900, Tel7E01G1003500
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG042850, gene_TRIDC1BG048680 ... gene_TRIDC3AG004740, gene_TRIDC3AG051160, gene_TRIDC3BG005650, gene_TRIDC3BG057740, gene_TRIDC4AG009740, gene_TRIDC4BG041050, gene_TRIDC6AG048390, gene_TRIDC6BG056550
Poaceae	Triticum aestivum	15	TraesCS1A02G287100.1, TraesCS1B02G296500.1 ... TraesCS1D02G286000.1, TraesCS3A02G042600.1, TraesCS3A02G355500.2, TraesCS3B02G040900.3, TraesCS3B02G388400.1, TraesCS3D02G038000.3, TraesCS3D02G349500.1, TraesCS4A02G077100.1, TraesCS4B02G233300.1, TraesCS4D02G234400.1, TraesCS6A02G322500.1, TraesCS6B02G353300.1, TraesCS6D02G302400.1
Poaceae	Zea mays	4	Zm00001eb009890_P003, Zm00001eb125400_P002 ... Zm00001eb148620_P001, Zm00001eb256540_P003
Poaceae	Zoysia japonica	7	nbis-gene-11473, nbis-gene-11949, nbis-gene-14160 ... nbis-gene-2366, nbis-gene-3954, nbis-gene-40032, nbis-gene-7068
Poaceae	Zoysia macrostachya	9	Zma_g11499, Zma_g1709, Zma_g17262, Zma_g27055, Zma_g27056 ... Zma_g4076, Zma_g7538, Zma_g8958, Zma_g9898
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.2452, evm.TU.LG11.1239, evm.TU.LG18.1133 ... evm.TU.LG20.738
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g34900, gene.Posoc02g25510, gene.Posoc04g01740 ... gene.Posoc08g04630
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.438, evm.TU.Scaffold_4_RagTag.1684 ... evm.TU.Scaffold_8_RagTag.59, evm.TU.Scaffold_9_RagTag.25, evm.TU.Scaffold_9_RagTag.26
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10297, nbisL1-mrna-22180, nbisL1-mrna-22181 ... nbisL1-mrna-22182, nbisL1-mrna-26051
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-1030, nbisL1-mrna-10764, nbisL1-mrna-13147 ... nbisL1-mrna-1645, nbisL1-mrna-17969
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-14156, nbisL1-mrna-17705, nbisL1-mrna-4498 ... nbisL1-mrna-7660, nbisL1-mrna-7662
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.15, evm.TU.utg000003l.16 ... evm.TU.utg000005l.101, evm.TU.utg000008l.939, evm.TU.utg000018l.948
Rhizophoraceae	Kandelia obovata	5	Maker00001105, Maker00003191, Maker00010125, Maker00017532 ... Maker00017576
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-2114, nbisL1-mrna-3063, nbisL1-mrna-509 ... nbisL1-mrna-6640, nbisL1-mrna-6641
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11514, nbisL1-mrna-21568, nbisL1-mrna-21570 ... nbisL1-mrna-9491
Salicaceae	Populus euphratica	10	populus_peu04407, populus_peu04408, populus_peu04410 ... populus_peu06375, populus_peu06694, populus_peu20206, populus_peu20583, populus_peu20584, populus_peu20585, populus_peu35232
Solanaceae	Lycium barbarum	5	gene-LOC132604612, gene-LOC132626029, gene-LOC132627427 ... gene-LOC132636257, gene-LOC132640168
Solanaceae	Solanum chilense	6	SOLCI000047200, SOLCI000211300, SOLCI002737100 ... SOLCI003315100, SOLCI004430400, SOLCI007291900
Solanaceae	Solanum pennellii	6	gene-LOC107006763, gene-LOC107006784, gene-LOC107007282 ... gene-LOC107013977, gene-LOC107020760, gene-LOC107032367
Tamaricaceae	Reaumuria soongarica	5	gene_4661, gene_4849, gene_4896, gene_4975, gene_5325
Tamaricaceae	Tamarix chinensis	4	TC02G3436, TC02G3623, TC02G3781, TC06G1268
Zosteraceae	Zostera marina	3	Zosma01g20960.v3.1, Zosma02g21240.v3.1, Zosma06g13340.v3.1