Basic Information
Locus ID:
BniB06g005120.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 2499054 | 2500100 | + | BniB06g005120.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 38,047.92 Da | 81.82 | 63.33 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 237 | 341 | 5.5E-26 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 169 | 211 | 8.9E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 34 | 5.6E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 217 | 3.98E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 217 | 1.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 170 | 210 | 4.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 170 | 211 | 12.017182 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 69 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_009143292.1 | probable E3 ubiquitin-protein ligase RHC2A [Brassica rapa] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WB49 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009094 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology