Basic Information
Locus ID:
BniB06g005100.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
rRNA processing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 2495133 | 2496236 | - | BniB06g005100.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 29,357.61 Da | 35.62 | 78.64 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 67 | 120 | 9.43217E-17 | IPR001623 |
| Pfam | PF00226 | DnaJ domain | 67 | 128 | 2.7E-19 | IPR001623 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 170 | 234 | 1.3E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 146 | 248 | 1.9E-19 | IPR035979 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 62 | 132 | 5.1E-20 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 54 | 140 | 3.4E-20 | IPR036869 |
| Gene3D | G3DSA:3.30.70.330 | - | 143 | 256 | 4.9E-17 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 165 | 236 | 2.1E-12 | IPR000504 |
| SMART | SM00271 | dnaj_3 | 66 | 123 | 7.9E-18 | IPR001623 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 164 | 240 | 13.327828 | IPR000504 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 67 | 131 | 15.001943 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 87 | 102 | 1.5E-10 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 69 | 87 | 1.5E-10 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 103 | 123 | 1.5E-10 | IPR001623 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06340.1 | DNAJ heat shock N-terminal domain-containing protein. | 0 |
| RefSeq | XP_022556877.1 | protein HLJ1-like [Brassica napus] | 0 |
| Q9FVQ1 | Nucleolin 1 OS=Arabidopsis thaliana OX=3702 GN=NUCL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816JAS3 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C04P08010.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology