Basic Information
Locus ID:
BniB06g003790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 1929850 | 1932226 | + | BniB06g003790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 75,807.44 Da | 38.02 | 94.98 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 427 | 691 | 3.00567E-106 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 425 | 688 | 2.1E-38 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 144 | 203 | 5.0E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 68 | 3.0E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 239 | 3.32E-43 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 396 | 690 | 4.41E-57 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 138 | 7.9E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 139 | 262 | 2.0E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 500 | 695 | 7.4E-42 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 387 | 499 | 4.8E-25 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 421 | 692 | 28.640444 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 277 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45340.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_009143131.1 | probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Brassica rapa] | 0 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B9E8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008971 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology