Basic Information
Locus ID:
BniB06g002800.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ER-associated misfolded protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 1423616 | 1424851 | + | BniB06g002800.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 44,832.37 Da | 71.97 | 72.60 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 125 | 172 | 1.2E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 175 | 1.51E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 180 | 2.6E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 166 | 2.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 167 | 12.002429 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 411 | - | - |
| Coils | Coil | Coil | 38 | 65 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018433133.1 | PREDICTED: uncharacterized protein LOC108805696 [Raphanus sativus] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W8R7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008812 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology