Basic Information
Locus ID:
BniB06g001540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 658723 | 678610 | - | BniB06g001540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 287,953.25 Da | 35.55 | 88.40 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 1629 | 1717 | 1.281E-13 | IPR002083 |
| CDD | cd00121 | MATH | 716 | 840 | 1.25247E-22 | IPR002083 |
| CDD | cd00121 | MATH | 6 | 133 | 1.2048E-22 | IPR002083 |
| CDD | cd00121 | MATH | 2048 | 2173 | 5.60921E-29 | IPR002083 |
| CDD | cd00121 | MATH | 1164 | 1259 | 5.19738E-6 | IPR002083 |
| Pfam | PF00917 | MATH domain | 1632 | 1719 | 7.8E-5 | IPR002083 |
| Pfam | PF00917 | MATH domain | 17 | 134 | 2.0E-11 | IPR002083 |
| Pfam | PF00917 | MATH domain | 723 | 842 | 4.1E-10 | IPR002083 |
| Pfam | PF00917 | MATH domain | 2054 | 2173 | 1.1E-13 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 2047 | 2173 | 2.94E-27 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 1629 | 1717 | 1.18E-14 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 5 | 138 | 8.18E-29 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 1169 | 1264 | 2.62E-10 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 716 | 844 | 5.07E-25 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1156 | 1281 | 1.0E-10 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 711 | 850 | 9.1E-29 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 2043 | 2190 | 5.9E-30 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1625 | 1730 | 3.0E-16 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 2 | 140 | 3.8E-29 | IPR008974 |
| SMART | SM00061 | math_3 | 717 | 823 | 1.6E-6 | IPR002083 |
| SMART | SM00061 | math_3 | 2049 | 2156 | 8.4E-9 | IPR002083 |
| SMART | SM00061 | math_3 | 1629 | 1763 | 0.036 | IPR002083 |
| SMART | SM00061 | math_3 | 7 | 115 | 4.6E-4 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 2047 | 2173 | 28.624321 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 715 | 840 | 24.686619 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 5 | 132 | 24.09852 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 1624 | 1731 | 11.26263 | IPR002083 |
| Coils | Coil | Coil | 224 | 244 | - | - |
| Coils | Coil | Coil | 1570 | 1590 | - | - |
| Coils | Coil | Coil | 2318 | 2345 | - | - |
| Coils | Coil | Coil | 585 | 605 | - | - |
| Coils | Coil | Coil | 1887 | 1907 | - | - |
| Coils | Coil | Coil | 1823 | 1843 | - | - |
| Coils | Coil | Coil | 1048 | 1068 | - | - |
| Coils | Coil | Coil | 504 | 524 | - | - |
| Coils | Coil | Coil | 986 | 1006 | - | - |
| Coils | Coil | Coil | 1404 | 1424 | - | - |
| Coils | Coil | Coil | 2376 | 2396 | - | - |
| Coils | Coil | Coil | 259 | 311 | - | - |
| Coils | Coil | Coil | 1448 | 1468 | - | - |
| Coils | Coil | Coil | 328 | 411 | - | - |
| Coils | Coil | Coil | 1595 | 1622 | - | - |
| Coils | Coil | Coil | 2467 | 2487 | - | - |
| Coils | Coil | Coil | 1919 | 1939 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42480.1 | TRAF-like family protein. | 0 |
| RefSeq | XP_013632325.1 | PREDICTED: MATH domain and coiled-coil domain-containing protein At2g42480-like [Brassica oleracea var. oleracea] | 0 |
| P0DKG7 | MATH domain and coiled-coil domain-containing protein At2g42480 OS=Arabidopsis thaliana OX=3702 GN=At2g42480 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7P734 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020776, gene:ENSEOMG00000042009 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053150, pistato.v30053760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 38 | AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... |
| Brassicaceae | Eutrema salsugineum | 38 | Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 18 | Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... |
| Brassicaceae | Brassica nigra | 59 | BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021253 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36802 |
| Salicaceae | Populus euphratica | 1 | populus_peu12364 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019779 |
| Zosteraceae | Zostera marina | 6 | Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... |