Basic Information
Locus ID:
BniB06g000460.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CRK1
Description:
CDPK-related kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 181201 | 184218 | + | BniB06g000460.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 64,615.43 Da | 49.45 | 83.74 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 126 | 388 | 1.70441E-129 | - |
| Pfam | PF00069 | Protein kinase domain | 127 | 389 | 6.4E-72 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 417 | 571 | 4.48E-17 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 117 | 430 | 1.89E-83 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 123 | 213 | 5.1E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 214 | 408 | 8.7E-61 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 409 | 571 | 5.2E-14 | - |
| SMART | SM00220 | serkin_6 | 127 | 389 | 1.3E-98 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 127 | 389 | 50.124123 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 251 | 263 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 133 | 159 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 70 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41140.1 | CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1). | 0 |
| RefSeq | XP_018440932.1 | PREDICTED: CDPK-related kinase 1 [Raphanus sativus] | 0 |
| O80673 | CDPK-related kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7RRW3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_050223 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology