Basic Information
Locus ID:
BniB05g075540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein At4g22165
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 68047996 | 68049201 | - | BniB05g075540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 46,817.77 Da | 31.75 | 79.70 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 58 | 2.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 81 | 1.44E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 54 | 6.9E-8 | - |
| SMART | SM00256 | fbox_2 | 20 | 60 | 1.2E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 14 | 65 | 8.782121 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22660.1 | F-box family protein with a domain of unknown function (DUF295). | 0 |
| RefSeq | XP_022543787.1 | probable F-box protein At4g22165 [Brassica napus] | 0 |
| O49647 | Putative F-box protein At4g22660 OS=Arabidopsis thaliana OX=3702 GN=At4g22660 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X8AVJ5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 36 | AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... |
| Brassicaceae | Brassica nigra | 32 | BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... |