Basic Information
Locus ID:
BniB05g075340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 67922537 | 67923367 | - | BniB05g075340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 31,436.27 Da | 31.60 | 94.24 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 139 | 4.5E-13 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 160 | 224 | 1.3E-5 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 267 | 3.99E-90 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 271 | 3.4E-100 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_013676925.1 | probable CCR4-associated factor 1 homolog 6 [Brassica napus] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VLS6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025227 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology