Basic Information
Locus ID:
BniB05g075180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 67858945 | 67863722 | - | BniB05g075180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 107,101.84 Da | 38.97 | 88.94 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 645 | 914 | 2.37551E-99 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 72 | 3.0E-4 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 641 | 910 | 6.7E-50 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 624 | 919 | 2.19E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 70 | 404 | 5.61E-47 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 715 | 935 | 2.3E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 415 | 6.3E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 194 | 1.4E-37 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 612 | 714 | 5.1E-36 | - |
| SMART | SM00220 | serkin_6 | 639 | 914 | 3.1E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 639 | 915 | 38.873459 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 759 | 771 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 645 | 667 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_009128375.1 | probable leucine-rich repeat receptor-like protein kinase At5g49770 [Brassica rapa] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VL13 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology