Basic Information
Locus ID:
BniB05g074970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
intracellular signal transduction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 67770097 | 67777515 | - | BniB05g074970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 158,474.34 Da | 54.52 | 73.09 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05574 | STKc_phototropin_like | 332 | 671 | 7.43646E-158 | - |
| Pfam | PF00069 | Protein kinase domain | 526 | 650 | 2.8E-23 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1130 | 1188 | 2.7E-15 | IPR000719 |
| Pfam | PF00646 | F-box domain | 722 | 760 | 2.5E-6 | IPR001810 |
| Pfam | PF00069 | Protein kinase domain | 1238 | 1361 | 5.1E-20 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 335 | 476 | 4.1E-27 | IPR000719 |
| Pfam | PF08268 | F-box associated domain | 924 | 1044 | 8.9E-31 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 722 | 772 | 9.16E-9 | IPR036047 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1098 | 1385 | 2.31E-49 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 316 | 675 | 2.05E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1123 | 1378 | 1.7E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 326 | 439 | 1.1E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 440 | 669 | 1.3E-47 | - |
| SMART | SM00256 | fbox_2 | 725 | 765 | 1.2E-4 | IPR001810 |
| SMART | SM00220 | serkin_6 | 334 | 650 | 4.7E-75 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1058 | 1361 | 7.6E-34 | IPR000719 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 837 | 1062 | 1.5E-44 | IPR017451 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 334 | 650 | 38.223297 | IPR000719 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 719 | 769 | 10.875178 | IPR001810 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1025 | 1361 | 29.841833 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1158 | 1170 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 445 | 457 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1386 | 1411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 309 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79250.1 | AGC kinase 1.7. | 0 |
| RefSeq | XP_013674930.2 | serine/threonine-protein kinase AGC1-7 isoform X2 [Brassica napus] | 0 |
| Q1PFB9 | Serine/threonine-protein kinase AGC1-7 OS=Arabidopsis thaliana OX=3702 GN=AGC1-7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AXK1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025189 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30790.1, AT1G32660.1 |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10002533m.g.v1.0, Thhalv10007869m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 7 | BniB03g034380.2N, BniB03g069480.2N, BniB05g000090.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008690 |