Basic Information
Locus ID:
BniB05g074790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DNA repair protein recA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 67611661 | 67614340 | - | BniB05g074790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 51,953.84 Da | 45.73 | 88.46 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 79 | 438 | 1.52616E-180 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 306 | 383 | 1.4E-24 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 82 | 277 | 1.5E-86 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 383 | 438 | 1.83E-17 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 81 | 382 | 1.39E-49 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 296 | 382 | 5.2E-14 | IPR027417 |
| Gene3D | G3DSA:3.30.250.10 | - | 385 | 441 | 8.0E-20 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 108 | 277 | 3.6E-67 | IPR027417 |
| SMART | SM00382 | AAA_5 | 129 | 288 | 2.6E-7 | IPR003593 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 312 | 387 | 28.719727 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 108 | 266 | 28.17351 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 326 | 334 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 237 | 266 | 3.3E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 199 | 228 | 3.3E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 358 | 387 | 3.3E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 412 | 429 | 3.3E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 165 | 194 | 3.3E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 323 | 351 | 3.3E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 80 | 444 | 43.059814 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 475 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_018456250.1 | PREDICTED: DNA repair protein recA homolog 1, chloroplastic [Raphanus sativus] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VLT3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025168 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology