halophFGD

Basic Information

Locus ID: BniB05g074420.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: mRNA 3'-splice site recognition

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	67429616	67431397	+	BniB05g074420.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.55	49,803.48 Da	34.04	83.14	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01805	Surp module	228	279	1.5E-11	IPR000061
SUPERFAMILY	SSF109905	Surp module (SWAP domain)	212	280	9.65E-15	IPR035967
SUPERFAMILY	SSF54236	Ubiquitin-like	356	435	8.08E-9	IPR029071
Gene3D	G3DSA:1.10.10.790	Surp module	223	281	1.1E-15	IPR035967
Gene3D	G3DSA:3.10.20.90	-	350	437	3.8E-10	-
SMART	SM00648	surpneu2	228	281	4.8E-11	IPR000061
ProSiteProfiles	PS50128	SURP motif repeat profile.	230	272	12.07238	IPR000061

Gene Ontology

Biological Process:

GO:0006396 (RNA processing)

Molecular Function:

GO:0003723 (RNA binding)

KEGG Pathway

KO Term:

K12825 (splicing factor 3A subunit 1)

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G06520.1	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein.	0
RefSeq	XP_018468891.1	PREDICTED: uncharacterized protein LOC108840549 [Raphanus sativus]	0
TrEMBL	A0A8X7VLS4	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025136 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	4	AT3G49130.1, AT5G06520.1, AT5G06890.1, AT5G12280.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10015432m.g.v1.0, Thhalv10015678m.g.v1.0 ... Thhalv10015956m.g.v1.0, Thhalv10019612m.g.v1.0
Brassicaceae	Brassica nigra	4	BniB03g006140.2N, BniB05g073630.2N, BniB05g073670.2N ... BniB05g074420.2N