Basic Information
Locus ID:
BniB05g074000.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 67117574 | 67118251 | - | BniB05g074000.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 25,413.13 Da | 49.10 | 87.02 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 169 | 210 | 7.9E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 216 | 3.18E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 212 | 5.5E-9 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 211 | 10.453364 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77830.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018459883.1 | PREDICTED: uncharacterized protein LOC108830803 [Raphanus sativus] | 0 |
| TrEMBL | A0A8X7VMF2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025087 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G77830.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005670m.g.v1.0, Thhalv10019846m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g20460.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g074000.2N |