Basic Information
Locus ID:
BniB05g073670.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mRNA 3'-splice site recognition
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 66853918 | 66855960 | - | BniB05g073670.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 63,568.38 Da | 44.19 | 86.44 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01805 | Surp module | 290 | 338 | 2.2E-9 | IPR000061 |
| Pfam | PF01805 | Surp module | 144 | 189 | 1.8E-4 | IPR000061 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 116 | 191 | 5.63E-7 | IPR035967 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 289 | 339 | 1.57E-9 | IPR035967 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 460 | 542 | 2.78E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 456 | 544 | 1.1E-10 | - |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 137 | 192 | 1.7E-9 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 289 | 340 | 2.6E-11 | IPR035967 |
| SMART | SM00648 | surpneu2 | 142 | 193 | 1.6 | IPR000061 |
| SMART | SM00648 | surpneu2 | 286 | 340 | 3.2E-4 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 144 | 184 | 8.961528 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 287 | 331 | 9.580163 | IPR000061 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49130.1 | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein. | 0 |
| RefSeq | XP_013684203.2 | uncharacterized protein LOC106388631 [Brassica napus] | 0 |
| TrEMBL | A0A8X7VLK2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025048 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G49130.1, AT5G06520.1, AT5G06890.1, AT5G12280.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10015432m.g.v1.0, Thhalv10015678m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 4 | BniB03g006140.2N, BniB05g073630.2N, BniB05g073670.2N ... |