Basic Information
Locus ID:
BniB05g073630.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mRNA 3'-splice site recognition
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 66843325 | 66843552 | + | BniB05g073630.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 8,642.98 Da | 31.81 | 106.40 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 69 | 2.53E-8 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 70 | 1.2E-8 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009116682.1 | uncharacterized protein LOC103841858 [Brassica rapa] | 0 |
| TrEMBL | A0A8X7VKR8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025045 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G49130.1, AT5G06520.1, AT5G06890.1, AT5G12280.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10015432m.g.v1.0, Thhalv10015678m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 4 | BniB03g006140.2N, BniB05g073630.2N, BniB05g073670.2N ... |