Basic Information
Locus ID:
BniB05g072950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
positive regulation of bicellular tight junction assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 66320685 | 66322410 | - | BniB05g072950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 59,366.39 Da | 57.02 | 89.98 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 41 | 9.0E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 46 | 1.31E-11 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 96 | 412 | 1.22E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 46 | 1.6E-6 | - |
| SMART | SM00579 | 9598neu4hmm | 438 | 512 | 1.1E-22 | IPR006566 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 51 | 10.000863 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 309 | - | - |
| Coils | Coil | Coil | 46 | 71 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48400.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_013718586.2 | F-box/LRR-repeat protein At1g48400-like isoform X1 [Brassica napus] | 0 |
| Q56XW8 | F-box/LRR-repeat protein At1g48400 OS=Arabidopsis thaliana OX=3702 GN=At1g48400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VLF2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024983 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G21990.1, AT1G47920.1, AT1G48390.1, AT1G48400.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012238m.g.v1.0, Thhalv10013291m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29200.v2.2 |
| Brassicaceae | Brassica nigra | 18 | BniB01g014250.2N, BniB02g013580.2N, BniB02g052700.2N ... |