Basic Information
Locus ID:
BniB05g070390.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 64540561 | 64541073 | + | BniB05g070390.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 18,956.38 Da | 31.11 | 98.53 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 91 | 134 | 3.01177E-16 | - |
| Pfam | PF13639 | Ring finger domain | 91 | 134 | 3.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 140 | 6.71E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 142 | 1.6E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 92 | 133 | 8.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 134 | 12.179465 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14320.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_009128556.1 | putative RING-H2 finger protein ATL61 [Brassica rapa] | 0 |
| Q9LUL6 | Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3P6ALV8 | RING-type E3 ubiquitin transferase OS=Brassica campestris OX=3711 GN=BRAA02T06888Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology