Basic Information
Locus ID:
BniB05g070020.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 64383215 | 64384984 | - | BniB05g070020.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 46,828.12 Da | 44.17 | 91.06 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 45 | 243 | 1.70656E-133 | - |
| CDD | cd18787 | SF2_C_DEAD | 254 | 383 | 7.67295E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 66 | 227 | 1.3E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 267 | 375 | 7.1E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 110 | 395 | 5.4E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 250 | 414 | 1.4E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 31 | 249 | 3.3E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 60 | 257 | 1.8E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 294 | 375 | 2.9E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 72 | 242 | 29.012901 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 253 | 414 | 25.541737 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 41 | 69 | 9.633497 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 188 | 196 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72730.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_013614964.1 | PREDICTED: eukaryotic initiation factor 4A-3 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q9CAI7 | Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VLS5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology