Basic Information
Locus ID:
BniB05g069740.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 64205794 | 64206687 | + | BniB05g069740.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 32,879.45 Da | 71.01 | 82.63 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 117 | 160 | 7.31016E-21 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 1.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 164 | 9.19E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 164 | 4.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 118 | 159 | 6.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 12.489278 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 297 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_018468634.1 | PREDICTED: RING-H2 finger protein ATL3-like [Raphanus sativus] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0M990 | RING-type E3 ubiquitin transferase OS=Raphanus sativus OX=3726 GN=LOC108840298 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology