Basic Information
Locus ID:
BniB05g064510.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 59599429 | 59600390 | + | BniB05g064510.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 34,467.60 Da | 38.66 | 85.86 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 136 | 232 | 1.7E-5 | IPR006527 |
| SUPERFAMILY | SSF117281 | Kelch motif | 106 | 227 | 7.98E-11 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 26 | 269 | 1.7E-11 | IPR015915 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 30 | 233 | 1.7E-21 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14315.2 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009109931.1 | putative F-box protein At2g02030 [Brassica rapa] | 0 |
| Q9M9T0 | Probable F-box protein At1g14315 OS=Arabidopsis thaliana OX=3702 GN=At1g14315 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8AVH9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024329 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009448m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB02g026720.2N, BniB05g064510.2N |