Basic Information
Locus ID:
BniB05g064170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 59335834 | 59336922 | - | BniB05g064170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 40,967.88 Da | 44.30 | 79.70 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 183 | 231 | 2.2E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 59 | 109 | 7.9E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 157 | 234 | 1.88E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 34 | 112 | 1.26E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 273 | 355 | 3.09E-11 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21830.2 | - | 0 |
| RefSeq | XP_009127564.1 | uncharacterized protein LOC103852411 [Brassica rapa] | 0 |
| TrEMBL | A0A8X7VJD2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024295 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |