halophFGD

Basic Information

Locus ID: BniB05g064070.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: protein ubiquitination

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	59274064	59275964	+	BniB05g064070.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.87	28,205.02 Da	58.95	103.96	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06222	RNase_H_like	161	244	4.25005E-15	IPR044730
Pfam	PF13456	Reverse transcriptase-like	162	245	2.4E-16	IPR002156
Pfam	PF12937	F-box-like	18	59	5.2E-6	IPR001810
SUPERFAMILY	SSF53098	Ribonuclease H-like	157	244	6.07E-5	IPR012337
SUPERFAMILY	SSF81383	F-box domain	11	73	1.57E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	10	59	3.3E-5	-
Gene3D	G3DSA:3.30.420.10	-	125	251	2.2E-11	IPR036397
SMART	SM00256	fbox_2	20	60	5.0E-4	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	14	60	11.48455	IPR001810

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
TAIR	AT4G38940.1	Galactose oxidase/kelch repeat superfamily protein.
RefSeq	XP_013738879.2	uncharacterized protein LOC106441630 [Brassica napus]
Swiss-Prot	Q9SVJ9	F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1
TrEMBL	A0A8X7VE30	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029334 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	31	Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... Thhalv10016904m.g.v1.0, Thhalv10016945m.g.v1.0, Thhalv10017512m.g.v1.0, Thhalv10017515m.g.v1.0, Thhalv10017533m.g.v1.0, Thhalv10017591m.g.v1.0, Thhalv10017616m.g.v1.0, Thhalv10017621m.g.v1.0, Thhalv10017648m.g.v1.0, Thhalv10017704m.g.v1.0, Thhalv10017708m.g.v1.0, Thhalv10017748m.g.v1.0, Thhalv10017764m.g.v1.0, Thhalv10017773m.g.v1.0, Thhalv10017778m.g.v1.0, Thhalv10017832m.g.v1.0, Thhalv10017911m.g.v1.0, Thhalv10017955m.g.v1.0, Thhalv10027506m.g.v1.0, Thhalv10029145m.g.v1.0, Thhalv10029154m.g.v1.0, Thhalv10029170m.g.v1.0, Thhalv10029266m.g.v1.0, Thhalv10029317m.g.v1.0, Thhalv10029396m.g.v1.0, Thhalv10029437m.g.v1.0, Thhalv10029470m.g.v1.0, Thhalv10029517m.g.v1.0, Thhalv10029520m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g12680.v2.2, Sp5g22490.v2.2
Brassicaceae	Brassica nigra	12	BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... BniB05g064040.2N, BniB05g064060.2N, BniB05g064070.2N, BniB06g019990.2N, BniB06g020020.2N, BniB08g016880.2N, BniB08g018650.2N, BniB08g018660.2N, BniB08g018680.2N