Basic Information
Locus ID:
BniB05g064040.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 59260062 | 59260499 | - | BniB05g064040.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.10 | 16,346.80 Da | 48.58 | 108.14 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 38 | 82 | 6.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 32 | 81 | 3.14E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 32 | 81 | 3.9E-5 | - |
| SMART | SM00256 | fbox_2 | 42 | 82 | 2.6E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 36 | 82 | 11.802483 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_018464034.1 | PREDICTED: F-box/kelch-repeat protein At4g38940-like [Raphanus sativus] | 0 |
| Q9SVJ9 | F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8ATJ8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024286 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 31 | Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g12680.v2.2, Sp5g22490.v2.2 |
| Brassicaceae | Brassica nigra | 12 | BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... |