Basic Information
Locus ID:
BniB05g063840.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger (MYND type) family protein F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 59152421 | 59153996 | + | BniB05g063840.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 40,274.57 Da | 52.75 | 79.63 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 308 | 347 | 7.0E-8 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 102 | 230 | 4.84E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 44 | 108 | 2.45E-7 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 312 | 351 | 9.59E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 296 | 354 | 5.5E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 64 | 251 | 2.4E-17 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 305 | 347 | 10.721173 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_013671041.2 | F-box protein At1g67340 [Brassica napus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AVF3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024269 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology