Basic Information
Locus ID:
BniB05g062990.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 58416677 | 58418856 | - | BniB05g062990.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 56,514.61 Da | 39.10 | 91.94 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 38 | 337 | 2.12561E-173 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 361 | 486 | 9.9E-12 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 489 | 7.59E-19 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 37 | 336 | 7.85E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 36 | 338 | 1.2E-35 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 354 | 500 | 6.5E-17 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 38 | 338 | 39.875439 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 354 | 511 | 20.687643 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_018470178.1 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL1-like [Raphanus sativus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6J0ME01 | glycerophosphodiester phosphodiesterase OS=Raphanus sativus OX=3726 GN=LOC108841892 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology