Basic Information
Locus ID:
BniB05g062210.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 57608463 | 57610819 | + | BniB05g062210.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 54,150.60 Da | 38.71 | 94.67 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 33 | 352 | 1.0E-81 | IPR000490 |
| Pfam | PF07983 | X8 domain | 370 | 440 | 7.2E-19 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 33 | 352 | 1.5E-85 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 32 | 359 | 2.4E-113 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 363 | 461 | 4.4E-12 | - |
| SMART | SM00768 | X8_cls | 369 | 454 | 8.6E-49 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 267 | 280 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66250.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_018471618.1 | PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Raphanus sativus] | 0 |
| Q9C7U5 | Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g66250 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8AVB0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024164 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology