Basic Information
Locus ID:
BniB05g061940.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
spa1-related 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 57317983 | 57320565 | + | BniB05g061940.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 56,864.40 Da | 59.10 | 82.65 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 366 | 398 | 0.009 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 504 | 1.1E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 181 | 506 | 1.1E-102 | IPR015943 |
| SMART | SM00320 | WD40_4 | 409 | 448 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 398 | 5.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 236 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 286 | 0.92 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 504 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 356 | 0.027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 367 | 400 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 367 | 400 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 295 | 9.806668 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 273 | 287 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 385 | 399 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 491 | 505 | 8.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 273 | 287 | 8.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 385 | 399 | 8.1E-5 | IPR020472 |
| Coils | Coil | Coil | 74 | 94 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_013611717.1 | PREDICTED: protein SPA1-RELATED 2 [Brassica oleracea var. oleracea] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A816P1I3 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A09P28110.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology