Basic Information
Locus ID:
BniB05g061620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
GTP binding protein beta 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 57014992 | 57015693 | + | BniB05g061620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 11,522.93 Da | 61.10 | 77.00 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 89 | - | - |
KEGG Pathway
Pathway:
ko04011 (MAPK signaling pathway - yeast)
map04011 (MAPK signaling pathway - yeast)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04062 (Chemokine signaling pathway)
map04062 (Chemokine signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34460.4 | GTP binding protein beta 1. Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | NP_001078491.1 | GTP binding protein beta 1 [Arabidopsis thaliana] | 0 |
| P49177 | Guanine nucleotide-binding protein subunit beta OS=Arabidopsis thaliana OX=3702 GN=GB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3AZY4 | Zf-RVT domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21639 |
| Brassicaceae | Brassica nigra | 1 | BniB05g061620.2N |
| Poaceae | Zoysia japonica | 1 | nbis-gene-54366 |