Basic Information
Locus ID:
BniB05g061500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 56800031 | 56804770 | - | BniB05g061500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 64,318.03 Da | 51.59 | 62.06 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 129 | 179 | 1.4523E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 276 | 325 | 3.9E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 198 | 260 | 4.0E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 279 | 327 | 2.43E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 536 | 563 | 1.69E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 267 | 3.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 207 | 6.48E-18 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 256 | 511 | 7.6E-85 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 210 | 4.7E-18 | IPR013083 |
| Gene3D | G3DSA:4.10.1060.10 | - | 529 | 563 | 3.5E-6 | - |
| SMART | SM00547 | zf_4 | 538 | 562 | 4.0E-6 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 273 | 334 | 0.086 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 198 | 260 | 1.3E-22 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 536 | 563 | 8.580583 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 125 | 338 | 50.783981 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 173 | 9.405901 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 540 | 559 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_013615163.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Brassica oleracea var. oleracea] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VKI1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024112 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology