Basic Information
Locus ID:
BniB05g060690.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 56115467 | 56116577 | + | BniB05g060690.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 35,509.35 Da | 42.90 | 90.93 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 258 | 297 | 1.2E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 72 | 1.07E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 252 | 300 | 9.07E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 81 | 201 | 2.49E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 245 | 300 | 1.9E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 9 | 244 | 4.7E-19 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 255 | 297 | 11.032289 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50450.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_013615678.1 | PREDICTED: F-box protein At5g50450 [Brassica oleracea var. oleracea] | 0 |
| Q9FK27 | F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8AVA8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_024045 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology