Basic Information
Locus ID:
BniB05g058320.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 53881846 | 53885111 | + | BniB05g058320.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 85,020.20 Da | 50.85 | 84.94 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 581 | 734 | 6.33431E-53 | - |
| Pfam | PF06337 | DUSP domain | 25 | 102 | 4.4E-20 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 214 | 733 | 2.9E-61 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 5 | 102 | 1.96E-23 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 211 | 736 | 8.83E-91 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 108 | 193 | 2.9E-7 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 203 | 370 | 1.8E-46 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 559 | 744 | 1.7E-49 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 2 | 107 | 4.5E-26 | - |
| SMART | SM00695 | dusp | 20 | 108 | 1.5E-26 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 3 | 106 | 17.613501 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 213 | 736 | 49.816635 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 214 | 229 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_018455209.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like [Raphanus sativus] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VJE2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_023889 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology