Basic Information
Locus ID:
BniB05g056170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 50738023 | 50756726 | - | BniB05g056170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.22 | 144,373.20 Da | 51.05 | 87.02 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 985 | 1242 | 6.23096E-90 | - |
| Pfam | PF00069 | Protein kinase domain | 379 | 543 | 3.4E-35 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 980 | 1179 | 4.2E-47 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 194 | 285 | 2.9E-8 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 666 | 761 | 4.0E-11 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 73 | 166 | 5.4E-8 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 787 | 880 | 1.3E-9 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 964 | 1258 | 1.62E-77 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 366 | 625 | 7.96E-60 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 454 | 547 | 4.5E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 943 | 1054 | 1.3E-36 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 61 | 168 | 3.7E-10 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 339 | 453 | 5.3E-36 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 188 | 288 | 6.5E-18 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 656 | 763 | 4.1E-13 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1055 | 1249 | 2.7E-55 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 778 | 883 | 2.7E-19 | IPR038408 |
| SMART | SM00220 | serkin_6 | 378 | 589 | 1.5E-13 | IPR000719 |
| SMART | SM00220 | serkin_6 | 979 | 1245 | 1.2E-31 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 772 | 883 | 16.733257 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 655 | 764 | 14.352554 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 979 | 1250 | 38.49184 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 60 | 169 | 10.125224 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 181 | 288 | 16.117714 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 378 | 654 | 29.163401 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1100 | 1112 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 985 | 1007 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 384 | 406 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 499 | 511 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04540.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 39. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_006396683.2 | uncharacterized protein LOC18014392 [Eutrema salsugineum] | 0 |
| Q9SYS7 | Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana OX=3702 GN=CRK39 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7VJ58 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_023728 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |