Basic Information
Locus ID:
BniB05g055790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Protein pleiotropic regulatory locus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 50331386 | 50332608 | + | BniB05g055790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 16,767.03 Da | 66.36 | 90.20 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15900.1 | pleiotropic regulatory locus 1. Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10. | 0 |
| RefSeq | XP_048616918.1 | F-box/LRR-repeat protein At2g40920-like isoform X1 [Brassica napus] | 0 |
| Q42384 | Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816Q4P8 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C06P10670.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1912 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18792 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002099, Ah033823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35628, Sbi_jg974 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3756 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023450 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68926 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005707, gene:ENSEOMG00000037008 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014140, CQ.Regalona.r1.7BG0015800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234300 |
| Apiaceae | Apium graveolens | 2 | Ag6G00181, Ag7G01606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G010210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698165, gene-LOC103703613 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.954.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G31554 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G16650.1, AT4G15900.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022263m.g.v1.0, Thhalv10025068m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g14940.v2.2, Sp7g14350.v2.2, SpUn1161_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g073630.2N, BniB05g020390.2N, BniB05g055790.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1130 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1227 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2647s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g04110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3028, nbisL1-mrna-5079 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1295 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028059, Pov_00028060, Pov_00031986 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33999 |
| Poaceae | Echinochloa crus-galli | 4 | AH09.193, BH01.2015, CH01.2103, Contig328.73 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0326650, gene-QOZ80_4BG0358680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0253650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_006901, gene-QYE76_052157 |
| Poaceae | Oryza coarctata | 4 | Oco05G013080, Oco06G013390, Oco17G009500, Oco18G009510 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g21990.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G027300, gene-BS78_K285100 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0604039, Pt_Chr0605301, Pt_Chr0700506, Pt_Chr0700560 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G031990, Chr05G009980, Chr10G020650, Chr11G001990 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G306400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG024390, gene_TRIDC3BG028110 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G175600.2, TraesCS3B02G205300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051300_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32015, nbis-gene-40598 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20885, Zma_g33273 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.493, evm.TU.LG21.187 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.588, evm.TU.Scaffold_6_RagTag.595 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16093 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15888 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-490 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.344 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007774 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12195, nbisL1-mrna-13734 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3646 |
| Salicaceae | Populus euphratica | 3 | populus_peu08061, populus_peu22219, populus_peu22229 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132612705, gene-LOC132633620, gene-LOC132633622 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004130400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008122, gene-LOC114073927 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2951 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1074 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25650.v3.1 |