Basic Information
Locus ID:
BniB05g053580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 46371878 | 46374301 | + | BniB05g053580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 72,090.43 Da | 37.10 | 95.83 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 7.42748E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 549 | 588 | 3.7E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 467 | 505 | 2.8E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 4.5E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 257 | 327 | 3.4E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 356 | 636 | 7.3E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 334 | 2.52E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 507 | 655 | 2.3E-20 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 118 | 1.0E-11 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 493 | 9.7E-36 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 3.7E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 384 | 424 | 4.7E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 3.6E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 507 | 547 | 9.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 590 | 630 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 0.064 | IPR000225 |
| SMART | SM00185 | arm_5 | 548 | 588 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 0.58 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 13.1774 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 45.132526 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 518 | 560 | 9.1524 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 662 | - | - |
| Coils | Coil | Coil | 621 | 648 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_013603034.1 | PREDICTED: U-box domain-containing protein 13 [Brassica oleracea var. oleracea] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VIR1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_023561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology