Basic Information
Locus ID:
BniB05g050630.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Integrase core domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 36839984 | 36841121 | + | BniB05g050630.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 42,932.86 Da | 52.05 | 65.83 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00665 | Integrase core domain | 35 | 132 | 1.2E-13 | IPR001584 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 32 | 191 | 4.3E-44 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 36 | 200 | 1.5E-39 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 35 | 195 | 21.743219 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_018461248.1 | PREDICTED: uncharacterized protein LOC108832253 [Raphanus sativus] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3CKP1 | Integrase catalytic domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7937 |
| Amaranthaceae | Suaeda glauca | 21 | Sgl01711, Sgl02695, Sgl06865, Sgl07852, Sgl10642, Sgl12296 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G004270 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G04102, Ftri5G14832 |
| Brassicaceae | Brassica nigra | 6 | BniB02g026020.2N, BniB03g050210.2N, BniB05g050630.2N ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03974 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013442, gene-QYE76_055164, gene-QYE76_056584 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10413 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16920.v3.1 |