Basic Information
Locus ID:
BniB05g048720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
structural constituent of ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 28885225 | 28886430 | + | BniB05g048720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 42,964.23 Da | 37.07 | 89.58 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 198 | 326 | 1.0E-15 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 35 | 133 | 2.5E-6 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 188 | 327 | 2.75E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 30 | 175 | 3.4E-20 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 22 | 171 | 1.6E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 172 | 327 | 1.0E-12 | IPR036378 |
| SMART | SM00554 | fasc_3 | 223 | 327 | 4.0E-19 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 185 | 324 | 14.123697 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 24 | 172 | 13.503952 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 374 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_009151619.1 | fasciclin-like arabinogalactan protein 2 [Brassica rapa] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VHP5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_022974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology