Basic Information
Locus ID:
BniB05g045050.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 25140454 | 25144053 | - | BniB05g045050.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 43,519.56 Da | 47.09 | 75.25 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 316 | 374 | 2.6E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 170 | 214 | 1.9E-10 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 170 | 203 | 2.22E-6 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 268 | 315 | 3.32E-5 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 205 | 262 | 2.48E-19 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 342 | 378 | 2.0E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 341 | 1.2E-6 | IPR013083 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 167 | 202 | 10.71199 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 204 | 268 | 32.907627 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_009126278.1 | E3 ubiquitin-protein ligase MIEL1 [Brassica rapa] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TGT1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_096815 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology