Basic Information
Locus ID:
BniB05g044290.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
GTPase-activator protein for Rho-like GTPases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 24638354 | 24644353 | - | BniB05g044290.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 96,822.86 Da | 58.80 | 73.47 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 177 | 314 | 1.22967E-34 | - |
| CDD | cd00821 | PH | 22 | 121 | 2.44259E-10 | - |
| Pfam | PF00169 | PH domain | 20 | 125 | 3.8E-13 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 177 | 321 | 6.5E-32 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 614 | 693 | 3.9E-21 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 16 | 132 | 5.48E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 177 | 370 | 6.47E-34 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 12 | 128 | 4.5E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 144 | 370 | 4.8E-42 | IPR008936 |
| SMART | SM00233 | PH_update | 20 | 128 | 1.3E-15 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 174 | 365 | 4.7E-26 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 168 | 368 | 30.669039 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 19 | 126 | 14.7089 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 854 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 433 | - | - |
| Coils | Coil | Coil | 197 | 217 | - | - |
| Coils | Coil | Coil | 579 | 599 | - | - |
| Coils | Coil | Coil | 826 | 853 | - | - |
| Coils | Coil | Coil | 662 | 696 | - | - |
| Coils | Coil | Coil | 611 | 638 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_018470753.1 | PREDICTED: rho GTPase-activating protein 7 [Raphanus sativus] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0MFP9 | rho GTPase-activating protein 7 OS=Raphanus sativus OX=3726 GN=LOC108842366 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology