Basic Information
Locus ID:
BniB05g043820.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 24258094 | 24261062 | + | BniB05g043820.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 80,248.55 Da | 64.60 | 69.64 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01770 | UBX_UBXN2 | 670 | 740 | 5.74081E-31 | - |
| CDD | cd14349 | UBA_CF106 | 12 | 50 | 3.49142E-12 | IPR039517 |
| Pfam | PF08059 | SEP domain | 239 | 307 | 1.1E-18 | IPR012989 |
| Pfam | PF08059 | SEP domain | 396 | 464 | 1.6E-18 | IPR012989 |
| Pfam | PF08059 | SEP domain | 553 | 620 | 6.8E-17 | IPR012989 |
| Pfam | PF14555 | UBA-like domain | 13 | 52 | 4.4E-13 | - |
| Pfam | PF00789 | UBX domain | 664 | 739 | 1.8E-15 | IPR001012 |
| SUPERFAMILY | SSF46934 | UBA-like | 12 | 52 | 1.45E-7 | IPR009060 |
| SUPERFAMILY | SSF102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 542 | 635 | 2.75E-18 | IPR036241 |
| SUPERFAMILY | SSF102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 387 | 479 | 3.53E-20 | IPR036241 |
| SUPERFAMILY | SSF102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 229 | 322 | 5.62E-18 | IPR036241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 638 | 739 | 2.14E-20 | IPR029071 |
| Gene3D | G3DSA:3.30.420.210 | SEP domain | 233 | 298 | 1.1E-20 | IPR036241 |
| Gene3D | G3DSA:3.30.420.210 | SEP domain | 390 | 455 | 2.1E-20 | IPR036241 |
| Gene3D | G3DSA:3.10.20.90 | - | 614 | 741 | 1.5E-26 | - |
| Gene3D | G3DSA:3.30.420.210 | SEP domain | 547 | 609 | 5.0E-20 | IPR036241 |
| Gene3D | G3DSA:1.10.8.10 | - | 9 | 52 | 1.9E-11 | - |
| SMART | SM00166 | ubx_3 | 660 | 741 | 0.0016 | IPR001012 |
| SMART | SM00553 | faf_3 | 545 | 640 | 8.5E-29 | IPR012989 |
| SMART | SM00553 | faf_3 | 388 | 484 | 5.9E-35 | IPR012989 |
| SMART | SM00553 | faf_3 | 231 | 327 | 5.1E-33 | IPR012989 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 663 | 740 | 18.630713 | IPR001012 |
| ProSiteProfiles | PS51399 | SEP domain profile. | 234 | 301 | 26.851028 | IPR012989 |
| ProSiteProfiles | PS51399 | SEP domain profile. | 548 | 614 | 24.958271 | IPR012989 |
| ProSiteProfiles | PS51399 | SEP domain profile. | 391 | 458 | 28.145603 | IPR012989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 337 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15410.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma. | 0 |
| RefSeq | XP_022572458.1 | plant UBX domain-containing protein 5-like [Brassica napus] | 0 |
| Q7Y175 | Plant UBX domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PUX5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Q444 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_070400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21837, jg24141 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21997, gene_25727 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah017444, Ah037695 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g185480 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40216, Sbi_jg50198, Sbi_jg59709 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1800, Seu_jg24165 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011386, GOSA_00019713 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41603, Sgl46398, Sgl78645, Sgl81137 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010848, gene:ENSEOMG00000016190 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0001220, CQ.Regalona.r1.8BG0001140 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30018010, pistato.v30068930 |
| Apiaceae | Apium graveolens | 2 | Ag11G03280, Ag1G01165 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G009740, COCNU_08G005030, COCNU_11G000830 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705193, gene-LOC103710009 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.174.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G33423, Ftri3G05438 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G21660.1, AT4G04210.1, AT4G15410.1, AT4G22150.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10022118m.g.v1.0, Thhalv10025275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp6g04570.v2.2, Sp7g13580.v2.2, Sp7g20310.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB05g014950.2N, BniB05g043820.2N, BniB07g020920.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2362 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2445, Cgl04G1836 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g05140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0817s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g28550, gene.Thate04g29120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1038 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2112, evm.TU.LG12.1181 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00001248, Pov_00005990, Pov_00039072 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00533, Lb4G22280, Lb4G22982 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2380, AH09.1271, BH06.2174, BH09.1381, CH06.2397 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0314600, gene-QOZ80_4BG0345650 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0173880.1, HORVU.MOREX.r3.7HG0722350.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_035165, gene-QYE76_044413 |
| Poaceae | Oryza coarctata | 4 | Oco07G007880, Oco08G007800, Oco11G013400, Oco12G013540 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g39040.1, LOC_Os06g42810.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G124900, gene-BS78_10G199900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401037 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G018530, Chr11G004070, Chr23G011360, Chr25G008510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G572300, Tel7E01G659700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG047920, gene_TRIDC2BG050410 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G335700.1, TraesCS2B02G346200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb080480_P001, Zm00001eb387510_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-40950, nbis-gene-53722, nbis-gene-53723 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g19860, Zma_g21414, Zma_g30854, Zma_g33108 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1931, evm.TU.LG14.1112, evm.TU.LG18.926 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14400 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.1033 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20394, nbisL1-mrna-20507, nbisL1-mrna-23976 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4185, nbisL1-mrna-756 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21370, nbisL1-mrna-21728 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.858, evm.TU.utg000027l.13 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009889, Maker00017462 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10725, nbisL1-mrna-1202 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23304, nbisL1-mrna-4697 |
| Salicaceae | Populus euphratica | 4 | populus_peu10406, populus_peu10407, populus_peu18431 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132620395, gene-LOC132622247 |
| Solanaceae | Solanum chilense | 3 | SOLCI000730100, SOLCI004063200, SOLCI006161900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011946, gene-LOC107020406, gene-LOC107023986 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.30410_chr10_-, gene_16648 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1605, TC08G0148 |
| Zosteraceae | Zostera marina | 1 | Zosma01g28490.v3.1 |