Basic Information
Locus ID:
BniB05g040910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 22124667 | 22126914 | + | BniB05g040910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 51,691.86 Da | 54.07 | 86.53 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 250 | 298 | 6.05047E-15 | - |
| Pfam | PF12906 | RING-variant domain | 250 | 297 | 2.7E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 301 | 5.1E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 302 | 6.5E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 249 | 298 | 5.7E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 242 | 304 | 18.723099 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 75 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022556109.2 | uncharacterized protein LOC106385981 isoform X4 [Brassica napus] | 0 |
| TrEMBL | A0A8X8AUQ1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_022654 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology