Basic Information
Locus ID:
BniB05g040400.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 21743951 | 21745723 | - | BniB05g040400.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 44,690.43 Da | 41.47 | 83.19 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 93 | 317 | 8.6E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 68 | 374 | 9.7E-65 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 166 | 384 | 1.9E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 70 | 165 | 2.6E-20 | - |
| SMART | SM00220 | serkin_6 | 89 | 378 | 1.6E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 89 | 374 | 33.559078 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60090.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_013619664.1 | PREDICTED: serine/threonine-protein kinase CDL1-like [Brassica oleracea var. oleracea] | 0 |
| Q9SFT7 | Probable serine/threonine-protein kinase PBL26 OS=Arabidopsis thaliana OX=3702 GN=PBL26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VGN4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_022617 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G60080.1, AT5G60090.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009373m.g.v1.0, Thhalv10013099m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g21740.v2.2, Sp6g21750.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g039790.2N, BniB02g039820.2N, BniB05g040380.2N ... |