Basic Information
Locus ID:
BniB05g039130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 20844006 | 20845175 | - | BniB05g039130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 41,847.92 Da | 80.06 | 63.42 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 190 | 235 | 7.72944E-20 | - |
| Pfam | PF14369 | zinc-ribbon | 12 | 47 | 6.0E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 189 | 232 | 2.5E-11 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 252 | 375 | 2.1E-37 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 240 | 3.12E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 238 | 2.6E-20 | IPR013083 |
| SMART | SM00744 | ringv_2 | 189 | 232 | 0.0061 | IPR011016 |
| SMART | SM00184 | ring_2 | 190 | 231 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 232 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 364 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_013744533.1 | E3 ubiquitin-protein ligase RDUF2-like [Brassica napus] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VGP7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_022518 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology