Basic Information
Locus ID:
BniB05g037360.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 19824626 | 19826376 | - | BniB05g037360.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 44,434.07 Da | 52.87 | 84.17 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 1 | 119 | 2.9E-16 | IPR020683 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 234 | 284 | 9.5E-5 | IPR018957 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 133 | 184 | 3.7E-9 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 2 | 186 | 2.34E-34 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 292 | 2.15E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 1 | 54 | 2.3E-11 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 62 | 196 | 6.5E-28 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 304 | 1.4E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 29 | 60 | 0.0053 | IPR002110 |
| SMART | SM00248 | ANK_2a | 90 | 119 | 3.1E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 1 | 24 | 4400.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 133 | 162 | 9.3E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 234 | 284 | 4.5E-6 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 133 | 165 | 12.28877 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 29 | 51 | 9.61777 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 29 | 51 | 9.595634 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 234 | 285 | 10.645153 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 90 | 122 | 13.30375 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 90 | 117 | 12.752869 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 133 | 164 | 10.922203 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 249 | 258 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 149 | 163 | 1.7E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 91 | 106 | 1.7E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_022551597.1 | E3 ubiquitin-protein ligase XBAT32 isoform X2 [Brassica napus] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VGL7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_022370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology