Basic Information
Locus ID:
BniB05g034850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 18051629 | 18051922 | + | BniB05g034850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 10,968.62 Da | 51.14 | 89.38 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 44 | 86 | 4.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 90 | 1.3E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 94 | 6.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 45 | 85 | 9.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 45 | 86 | 12.474524 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12210.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048133457.1 | E3 ubiquitin-protein ligase RNF181-like [Rhodamnia argentea] | 0 |
| TrEMBL | A0A6D2IGU3 | RING-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS13083 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015640m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB05g034850.2N, BniB05g034860.2N |