Basic Information
Locus ID:
BniB05g033040.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 16742848 | 16745407 | - | BniB05g033040.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 42,800.97 Da | 51.39 | 83.74 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 325 | 368 | 9.12787E-16 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 96 | 2.0E-15 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 325 | 368 | 3.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 374 | 8.33E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 374 | 6.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 326 | 367 | 9.7E-6 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 5.0 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 368 | 12.754832 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018468391.1 | PREDICTED: putative RING-H2 finger protein ATL21A isoform X1 [Raphanus sativus] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7VFL1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_022011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology