Basic Information
Locus ID:
BniB05g031950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 15925765 | 15927283 | - | BniB05g031950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 26,160.43 Da | 46.74 | 69.00 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 182 | 225 | 8.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 229 | 8.24E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 229 | 2.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 183 | 224 | 5.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 183 | 225 | 10.92546 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52155.1 | - | 0 |
| RefSeq | XP_024011842.1 | E3 ubiquitin-protein ligase Os04g0590900 [Eutrema salsugineum] | 0 |
| Q570X5 | RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8D9M0C8 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A02P16870.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015563m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14390.v2.2, Sp6g14400.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g031950.2N |