Basic Information
Locus ID:
BniB05g031580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 15691940 | 15694020 | - | BniB05g031580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 44,873.46 Da | 36.59 | 91.93 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 266 | 402 | 4.93087E-69 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 49 | 210 | 1.60695E-94 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 267 | 390 | 7.5E-17 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 46 | 217 | 9.6E-36 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 46 | 225 | 3.87E-45 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 266 | 412 | 3.93E-34 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 43 | 220 | 2.7E-62 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 252 | 401 | 1.7E-43 | - |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 279 | 298 | - | IPR000399 |
| Coils | Coil | Coil | 180 | 200 | - | - |
| Coils | Coil | Coil | 363 | 383 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_013618619.1 | PREDICTED: pyruvate decarboxylase 4 [Brassica oleracea var. oleracea] | 0 |
| Q9M040 | Pyruvate decarboxylase 4 OS=Arabidopsis thaliana OX=3702 GN=PDC4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9QD73 | pyruvate decarboxylase OS=Brassica cretica OX=69181 GN=F2Q69_00018243 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology