Basic Information
Locus ID:
BniB05g031200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 15447167 | 15450387 | - | BniB05g031200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 98,752.13 Da | 42.65 | 64.49 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 442 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 550 | 586 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 508 | 544 | 7.4E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 405 | 732 | 4.03E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 394 | 745 | 9.2E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 588 | 627 | 0.82 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 443 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 547 | 586 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 679 | 720 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 642 | 678 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 544 | 1.2E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 553 | 595 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 411 | 452 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 553 | 589 | 10.970139 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 411 | 445 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 513 | 553 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 513 | 547 | 11.418318 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 531 | 545 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 430 | 444 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 573 | 587 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 430 | 444 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 531 | 545 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 841 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 841 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 816 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_013619130.1 | PREDICTED: WD repeat-containing protein 44 [Brassica oleracea var. oleracea] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6CI21 | WD_REPEATS_REGION domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T06045H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology